The Influence of Some Engineering Variables Upon the Morphology of Rhizopus nigricansina Stirred Tank Bioreactor

Morphological characteristics of submerged cultures of steroid-transforming filamentous fungus Rhizopus nigricans were followed in stirred-tank bioreactors at different cultivation conditions. The influence of inoculum concentration and morphology on submerged growth of Rhizopus nigricans in the reactor was investigated. The results indicated the benefit of using inocula below 103 spores mL–1 in order to obtain pelleted growth form and to prevent undesired growth on the broth surface. Furthermore, the effect of energy dissipation rate on the morphology and biomass yield was evaluated by the use of different number and types of impellers at different agitation rates. Our study confirmed the inverse proportional relationship between energy dissipation rate and pellet diameter, which was in correlation with pellet fragmentation at high energy input

The Influence of Some Engineering Variables Upon the Morphology of Rhizopus nigricansina Stirred Tank Bioreactor

Morphological characteristics of submerged cultures of steroid-transforming filamentous fungus Rhizopus nigricans were followed in stirred-tank bioreactors at different cultivation conditions. The influence of inoculum concentration and morphology on submerged growth of Rhizopus nigricans in the reactor was investigated. The results indicated the benefit of using inocula below 103 spores mL–1 in order to obtain pelleted growth form and to prevent undesired growth on the broth surface. Furthermore, the effect of energy dissipation rate on the morphology and biomass yield was evaluated by the use of different number and types of impellers at different agitation rates. Our study confirmed the inverse proportional relationship between energy dissipation rate and pellet diameter, which was in correlation with pellet fragmentation at high energy input

Characterization of an enzymatic packed-bed microreactor: Experiments and modeling

A micro packed-bed reactor (µPBR) based on two-parallel-plates configuration with immobilized Candida antarctica lipase B in the form of porous particles (Novozym® 435) was theoretically and experimentally characterized. A residence time distribution (RTD) within µPBRs comprising various random distributions of particles placed in one layer was computationally predicted by a mesoscopic lattice Boltzmann (LB) method. Numerical simulations were compared with measurements of RTD, obtained by stimulus-response experiment with a pulse input using glucose as a tracer, monitored by an electrochemical glucose oxidase microbiosensor integrated with the reactor. The model was validated by a good agreement between the experimental data and predictions of LB model at different conditions. The developed µPBR was scaled-up in length and width comprising either a single or two layers of Novozym® 435 particles and compared regarding the selected enzyme-catalyzed transesterification. A linear increase in the productivity with the increase in all dimensions of the µPBR between two-plates demonstrated very efficient and simple approach for the capacity rise. Further characterization of µPBRs of various sizes using the piezoresistive pressure sensor revealed very low pressure drops as compared to their conventional counterparts and thereby great applicability for production systems based on numbering-up approach

Image analysis technique as a tool to identify morphological changes in Trametes versicolor pellets according to exopolysaccharide or laccase production

Image analysis technique was applied to identify morphological changes of pellets from white-rot fungus Trametes versicolor on agitated submerged cultures during the production of exopolysaccharide (EPS) or ligninolytic enzymes. Batch tests with four different experimental conditions were carried out. Two different culture media were used, namely yeast medium or Trametes defined medium and the addition of lignolytic inducers as xylidine or pulp and paper industrial effluent were evaluated. Laccase activity, EPS production, and final biomass contents were determined for batch assays and the pellets morphology was assessed by image analysis techniques. The obtained data allowed establishing the choice of the metabolic pathways according to the experimental conditions, either for laccase enzymatic production in the Trametes defined medium, or for EPS production in the rich Yeast Medium experiments. Furthermore, the image processing and analysis methodology allowed for a better comprehension of the physiological phenomena with respect to the corresponding pellets morphological stages.The authors acknowledge Portucel-Empresa de Celulose e Papel, Cacia, Portugal, SA for the pulp and paper Kraft effluent used in this work. This work was funded by FEDER Funds through the Programa Operacional Factores de Competitividade-COMPETE, and national funds through FCT-Fundacao para a Ciencia e a Tecnologia under the projects PEst-C/CTM/LA/0011/2013 and PEst-C/EQB/LA0020/2013. A. P. M. Tavares acknowledge the financial support of (Programme Ciencia 2008) FCT, Portugal

Clinical validity assessment of genes frequently tested on intellectual disability/autism sequencing panels.

[en] PURPOSE: Neurodevelopmental disorders (NDDs), such as intellectual disability (ID) and autism spectrum disorder (ASD), exhibit genetic and phenotypic heterogeneity, making them difficult to differentiate without a molecular diagnosis. The Clinical Genome Resource Intellectual Disability/Autism Gene Curation Expert Panel (GCEP) uses systematic curation to distinguish ID/ASD genes that are appropriate for clinical testing (ie, with substantial evidence supporting their relationship to disease) from those that are not. METHODS: Using the Clinical Genome Resource gene-disease validity curation framework, the ID/Autism GCEP classified genes frequently included on clinical ID/ASD testing panels as Definitive, Strong, Moderate, Limited, Disputed, Refuted, or No Known Disease Relationship. RESULTS: As of September 2021, 156 gene-disease pairs have been evaluated. Although most (75%) were determined to have definitive roles in NDDs, 22 (14%) genes evaluated had either Limited or Disputed evidence. Such genes are currently not recommended for use in clinical testing owing to the limited ability to assess the effect of identified variants. CONCLUSION: Our understanding of gene-disease relationships evolves over time; new relationships are discovered and previously-held conclusions may be questioned. Without periodic re-examination, inaccurate gene-disease claims may be perpetuated. The ID/Autism GCEP will continue to evaluate these claims to improve diagnosis and clinical care for NDDs

USE OF HIGH SURFACE NANOFIBROUS MATERIALS IN MEDICINE

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General aspects of immobilized biocatalysts and their applications in flow

Biocatalysis provides a unique opportunity to create complex and chiral molecules with unprecedented selectivity.[1-8] Enzymes are the preferred catalysts.[9-13] "White biotechnology" exploits biocatalysis on an industrial level, and the number of applications is increasing;[ 14-19] it is the application of "nature's toolset", for example microorganisms and enzymes, for the production of (fine) chemicals, pharmaceuticals, food ingredients, materials, and biofuels from renewable resources. It was estimated that the market share of biochemicals would increase to 12-20% of chemical production by 2015.[20] The degree of biopharmaceuticals increased from 7.8 to 15.6% from 2001 to 2011.[21] In Europe's biopharmaceutical sector, already some 20% of the current medicines are derived from biotechnology, and up to 50% of new medicines.[20] As with homogeneous chemocatalysis,[22] catalyst separation after completion of the reaction is the big issue to solve, for reasons of avoiding product contamination, cost of catalyst, and environmental friendliness. In a similar fashion to chemocatalysis, the immobilization of biocatalysts on a solid support is a prime approach,[23-26] as the "separation" is effectively done in one step ahead of the reaction and no further efforts downstream are needed. The catalyst can be used many times until its destabilization becomes significant. Enzyme fixation has been known for a long time,[7,27,28] and commercially fixed catalyst- carrier systems are available, such as Novozymes' immobilized lipase enzymes.[29] While fixed enzymes have been successfully used with conventional reactor technology, their more recent application in continuous small-scale reactors provides a seemingly ideal technology fit.[30,31] In 2015, the U.S. Food and Drug Administration (FDA) called on pharmaceutical manufacturers to change within one decade from batch to continuous reactions.[ 32] The essential tool in small-scale production is the microreactor or more commonly named flow reactor.[33-41] It can be microfabricated with inner dimensions of some hundred micrometers, but may be a microcapillary or a tube filled with material composed of "microspaces". There is a trend to move to somewhat larger milliscale reactors for reasons of throughput, reliability (sensitivity to clogging), and easiness of handling, while possibly compromising somewhat the high process intensification achieved on the microscale. Nonetheless, such milliscale systems generally still offer much better performance than conventional equipment. Continuous processing has been standard in petroleum and bulk chemistry from the beginning;[42] however, for a long time, the specialty and pharma industries preferred batch production due to its high flexibility, which fits well with the plethora of chemical products that are made. It also allows a fast change (shutdown and startup) in case new products are needed or production capacity is to be decreased or increased. With the increasing need for quality control and assurance and the steadily higher pressure for time-to-market, continuous systems have, in the last decade, become more important for small-scale fine-chemical production[43-46] and pharmaceuticals manufacture.[47-49] The term "flow chemistry" was coined for this[50-55] and has also shown cost and environmental advantages due to, among others, higher conversions and selectivity and lower solvent loads.[56,57] Due to the smallness of the processed volume, safety limitations are largely overcome, opening the door to forbidden and forgotten chemistries. In novel process windows, the needed decrease of reaction times to the short time scales of such processing can be achieved.[58-67] The unusual parameters even sometimes allow the exploration of completely new chemical pathways that are not possible with conventional equipment. Some processes have been taken to industrial scale.[39] Prime future research involves combining flow chemistry and artificial intelligence to a microprocessor control system for process optimization in a fully automated manner ("March of the Machines";[ 68,69] "The Robo-chemist"[70]). Rapid data exchange between machines operated at different locations and with different chemistries in foci will result in a chemical "Internet of Things".[71] Motivated by the considerations outlined above, pharmaceutical companies have aligned in a Pharmaceutical Roundtable and established the development of continuous production as their top priority.[72] Second-highest priority is given to bioprocesses. Consequently, both have been recently combined into "bio-flow chemistry"; enzymatic flow reactors are the most commonly used concept, and enzyme immobilization within these units is largely employed. Mini-packed-bed reactors, which are commonly found in small-scale continuous production, are ideal matrices for the immobilization of enzymes.[73-75] This is done on small beads, which are compressed within a tube to result in a packed bed. The range of bead materials spans from polymers to inorganic materials (typically oxides of metals and half metals) to modern artificial materials such as graphene oxide,[76] hierarchical porous monolithic rods,[77] polymer brushes,[78] and silica nanosprings.[79] Often these materials are porous, so that a much higher catalyst density and loading can be achieved in the small reactor volumes, which ensures higher productivity. Various ways of immobilizing the enzymes have been developed, as the surfaces of the above-mentioned support materials comprise different attachment groups, as do the enzymes.[73-79] Typically, a bifunctional chain provides the needed spatial flexibility so that the enzyme and its active center can behave as they would in a homogeneous environment.[ 73-75] The costs of enzyme immobilization are crucial for the overall capital costs of a bioflow- chemistry-based industrial system.[80] The quality of enzyme immobilization ensures sufficient operational time, i.e. a large number of process cycles before the enzyme is deactivated. This, together with the above-mentioned enzyme-density-triggered productivity, is essential to achieve industrial cost targets. This naturally also holds for biocatalytic batch processes. Thus, there is good reason to examine in more detail the diverse methods of enzyme immobilization; the following sections aim to provide such an overview and will also examine the role of these catalysts in bio-flow chemistry